All functions

add_weights_cluster()

Add a column of cluster survey weights to a data frame.

add_weights_strata()

Add a column of stratified survey weights to a data frame. For use in surveys where you took a sample population out of a larger source population, with a simple-random or stratified survey design.

available_sitrep_templates()

Display the available sitrep templates

data_frame_from_2x2()

create a data frame from a 2x2 matrix

age_categories attack_rate augment_redundant case_fatality_rate case_fatality_rate_df dots_to_charlist fac_from_num find_breaks fmt_ci fmt_ci_df fmt_count fmt_pci fmt_pci_df group_age_categories merge_ci_df merge_pci_df mortality_rate rename_redundant unite_ci

Exported functions from epikit

find_date_cause() find_start_date() find_end_date() constrain_dates() assert_positive_timespan()

Find the first date beyond a cutoff in several columns

gen_polygon()

Fake spatial data as polygons This function returns a polygon which is split in to regions based on a supplied vector of names

gen_population()

Generate population counts from estimated population age breakdowns.

msf_dict_survey msf_dict gen_data

Functions re-expored from epidict

msf_dict_rename_helper()

Helper for aligning your data to the dictionary

plot_age_pyramid()

Plot a population pyramid (age-sex) from a dataframe.

tab_linelist() tab_survey()

Tabulate counts and proportions

tab_univariate()

Produce odds ratios, risk ratios or incidence rate ratios

zcurve()

Create a curve comparing observed Z-scores to the WHO standard.